PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g01590.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 896aa    MW: 99247.2 Da    PI: 8.401
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g01590.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.5e-16803890194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f+k +++s+v+   +l lp +f++++  +    ++  +tl de+g+++   +   k++ +  l++GWk+F+ a++L +gD ++F+l++r++f+ +
  Vang05g01590.2 803 FIKSMLQSHVSGGFWLGLPVHFCKSNlpK----GDEVMTLIDEDGNEYPTIY--LKRKTG--LSGGWKGFAVAHDLADGDALIFQLIKRTTFKVT 889
                     89*********************999543....4458***************..666644..9************************99999766 PP

                     E CS
              B3  94 v 94 
                     +
  Vang05g01590.2 890 H 890
                     5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534749.7E-974253IPR029058Alpha/Beta hydrolase fold
PfamPF057059.6E-29115362IPR008547Protein of unknown function DUF829, TMEM53
Gene3DG3DSA:3.40.50.18201.0E-4147247IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF517354.71E-62399719IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7204.5E-60400718IPR016040NAD(P)-binding domain
PfamPF013705.8E-29402626IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
CDDcd052281.89E-115402718No hitNo description
Gene3DG3DSA:2.40.330.101.0E-18797890IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22797890IPR015300DNA-binding pseudobarrel domain
CDDcd100175.39E-24801889No hitNo description
PROSITE profilePS5086311.18803895IPR003340B3 DNA binding domain
SMARTSM010192.9E-22803894IPR003340B3 DNA binding domain
PfamPF023621.4E-14803891IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016487Biological Processfarnesol metabolic process
GO:0005774Cellular Componentvacuolar membrane
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0047886Molecular Functionfarnesol dehydrogenase activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MHSAKGIGEV AITPKLKYKA VPAFWLLMGP SHLTLPGLDQ YGYPDQVRFF PEKATILAVD  60
ILNELVEVLK IRQCPIVFAS FSGGSKACMQ KILQIISGSS EAHNMDDYQL VRECISGYIY  120
DSSPIDFTSN LGVRFLLHPN VLKVSHPPRF ASWFANGIAS GLDSLFLSRF ESQRAEYWQT  180
LYSTINMKVP YLILCSENDD LAPFQVISNF FQRLKDLGGD VKMLKWSASP HVGHFRHHPI  240
DYKAAITEIL GKAVATYCCK SSRKVEDEKL GIEGARDEIT DPFSESRKAA MTSTSFQGFA  300
LAPSDSLSSS STEYEVGKDI GTIADERKGG YIHLPSRPSI NAHGLLSQIL FDVCVPKNVE  360
DWDIRSSSKN ALSAVLGKSK KTERVFQNQR EFFRVESGTM KILVTGASGF LGGRLCDALL  420
LQGYSVRVLV RSTSDISSLS PDIEIFHGDI TDYASILAAC SSCTIVFHLA ALVEPWLPDP  480
SKFFSVNVGG LKNVLAAVME TRTVEKLLYT SSFFALGPTD GGVADENQVH HEKYFCTEYE  540
KSKAAADKIA LQAASEGVPI VLLYPGVIYG PGKVTAGNVV ARMLVERFSG RLPGYVGYGS  600
DKFSFSHVDD VVEGQISAMK KGKVGSRYLL TGENASFKHV FDMAAVITDT KKPVFSIPLW  660
VIEVYGWLSV LFSRITGKLP FISPPTVHVL RHRWEYCCEK AKSELDYRPR SLKEGLAELK  720
SIKKSRTTEK ELVVVRRSGR LAKLCSPVYK EMPIDRISIP RRCVSNRHRD LSNRVYASDE  780
ARMEALEQAE NLMSGLKSDI PNFIKSMLQS HVSGGFWLGL PVHFCKSNLP KGDEVMTLID  840
EDGNEYPTIY LKRKTGLSGG WKGFAVAHDL ADGDALIFQL IKRTTFKVTH HTLVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wj7_A4e-433967188330Putative oxidoreductase
3wj7_B4e-433967188330Putative oxidoreductase
3wj7_C4e-433967188330Putative oxidoreductase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225215.10.0hypothetical protein PRUPE_ppa001975mg
TrEMBLK7KSY00.0K7KSY0_SOYBN; Uncharacterized protein
STRINGGLYMA06G04186.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-52B3 family protein